| Organism | Source | Total |
|---|---|---|
| Homo sapiens | 157 from tRFdb | 1,944 |
| 113 from tsRNA study | ||
| 78 from tsRBase | ||
| 518 from tsRFun | ||
| 583 from MINTbase v2.0 (04/04/2019) | ||
| 17 from tRFexplorer (2019-05) | ||
| 475 from tatDB | ||
| 3 from OncotRF | ||
| Mus musculus | 164 from tRFdb | 170 |
| 6 from tsRBase | ||
| Caenorhabditis elegans | 47 from tRFdb | 47 |
| Danio rerio | 127 from tRFdb | 127 |
| Drosophila melanogaster | 86 from tRFdb | 90 |
| 4 from tsRBase | ||
| Rattus norvegicus | 4 from tsRBase | 4 |
| Rhodobacter sphaeroides | 77 from tRFdb | 77 |
| Schizosaccharomyces pombe | 104 from tRFdb | 104 |
| Xenopus tropicalis | 51 from tRFdb | 51 |
| Total | 2,614 |
| Organism | #Protein-coding mRNAs | #lncRNAs | #rRNAs | Total |
|---|---|---|---|---|
| Homo sapiens | 110,980 | 412,754 | 6,720 | 530,454 |
| Mus musculus | 67,002 | 85,246 | 254 | 152,502 |
| Caenorhabditis elegans | 31,989 | 202 | 173 | 32,364 |
| Danio rerio | 67,002 | 85,246 | 254 | 152,502 |
| Drosophila melanogaster | 51,259 | 2,627 | 5,134 | 59,020 |
| Rattus norvegicus | 45,893 | 32,901 | 308 | 79,102 |
| Rhodobacter sphaeroides | 4,333 | 0 | 5 | 4,338 |
| Schizosaccharomyces pombe | 5,060 | 1 | 112 | 5,173 |
| Xenopus tropicalis | 49,787 | 2 | 459 | 50,248 |
| Total | 397,102 | 536,633 | 14,407 | 948,142 |
| Organism | #Protein-coding Genes | #lncRNA Genes | #rRNA Genes | Total |
|---|---|---|---|---|
| Homo sapiens | 20,367 | 17,669 | 52 | 38,088 |
| Mus musculus | 22,322 | 11,102 | 170 | 33,594 |
| Caenorhabditis elegans | 19,981 | 193 | 19 | 20,193 |
| Danio rerio | 30,149 | 1,837 | 1,192 | 33,178 |
| Drosophila melanogaster | 13,986 | 2,369 | 106 | 16,461 |
| Rattus norvegicus | 23,096 | 2,456 | 212 | 25,764 |
| Rhodobacter sphaeroides | 4,333 | 0 | 5 | 4,338 |
| Schizosaccharomyces pombe | 4,333 | 0 | 0 | 4,333 |
| Xenopus tropicalis | 22,102 | 1 | 535 | 22,638 |
| Total | 161,387 | 35,627 | 2,332 | 199,346 |
| Organism | #RNAhybrid | #IntaRNA | #Consensus (pairs) |
|---|---|---|---|
| Homo sapiens | 3,377,427,836 | 2,416,199,928 | 542,988,333 |
| Mus musculus | 83,530,931 | 60,329,700 | 13,270,931 |
| Caenorhabditis elegans | 4,325,292 | 3,433,891 | 935,985 |
| Danio rerio | 25,605,277 | 18,787,232 | 4,452,811 |
| Drosophila melanogaster | 10,652,355 | 8,042,938 | 1,654,959 |
| Rattus norvegicus | 1,266,339 | 901,919 | 157,927 |
| Rhodobacter sphaeroides | 1,068,277 | 793,883 | 183,870 |
| Schizosaccharomyces pombe | 1,926,438 | 1,189,886 | 270,548 |
| Xenopus tropicalis | 9,404,617 | 7,590,218 | 2,081,926 |
| Total | 3,515,207,362 | 2,517,269,595 | 565,997,290 |
400 tRF target gene related publications have been manually curated, and total 232 gene-level evidence entries from 57 publications are extracted.
