tRFtarget 2.0

Explore transfer RNA-derived Fragment targets

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Run tRFtarget-pipeline Online

We provide online service of running tRFtarget-pipeline v0.3.2 to find binding sites between small RNAs (such as tRFs and miRNAs) and target RNAs. Detailed documentation of tRFtarget-pipeline can be found in our GitHub repository tRFtarget-pipeline.

Users are welcome to send issues, feedbacks, suggestions or comments on running online service through our GitHub repository tRFtarget.

tRF(s)

At most 50 sequences!

Accept FASTA file with fa, fasta extensions, or compressed FASTA file with gz, zip extensions; Only 1 file ≤ 50 KB allowed!

target RNA(s)

At most 50,000 sequences!

Accept FASTA file with fa, fasta extensions, or compressed FASTA file with gz, zip extensions; Only 1 file ≤ 50 MB allowed!

Options

  • Free energy threshold for RNAhybrid (--e_rnahybrid): kcal/mol
  • Free energy threshold for IntaRNA (--e_intarna): kcal/mol
  • Maximum Complementary Length threshold (-s): nucleotides
  • Reported number of interaction sites on each target RNA (-b):
  • Email (optional) :