680 Consensus binding sites for Homo sapiens RNA "ENST00000000233" with filters: tRF Type∈{tRF-1 / tsRNA,tRF-3,tRF-5,5'U tRF,i-tRF,5' tRH / tiR,3' tRH / tiR}; tRF Source∈{tRFdb,tsRNA study,tsRFun,tsRBase}; Binding Region∈{3' UTR,CDS,5' UTR,/}; Free Energy≤-10.0; MCL≥6; Evidence Only False
| tRF ID | Standardized tRF ID | RNA ID | RNA Name | Gene ID | Gene Name | Interaction Illustration | Free Energy -44-10 -44 -10 | Maximum Complementary Length 621 6 21 | Prediction Tool | tRF Type | tRF Source | RNA Type | Binding Region | Gene-level Evidence
| Site-level Evidence
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| hsa_tsr003995 | tDR-59:76-Pro-AGG-1-M8 | ENST00000000233 | ARF5-201 | ENSG00000004059 | ARF5 | 1 858 869 1032
| | | |
5'-CUG...UGGAA U CCAAG...GUA-3'
target GGGGCU UCC GG
|||||| ||| ||
tRF CCCCGA AGG CC
3'-AC GC C UA-5'
| | |
16 3 1 | -23.1 | 6 | RNAhybrid | tRF-3 | tsRBase | protein_coding | 3' UTR | ||
| hsa_tsr012844 | tDR-1:16-Lys-TTT-3-M2 | ENST00000000233 | ARF5-201 | ENSG00000004059 | ARF5 | 1 970 980 1032
| | | |
5'-CUG...GGUGA GGUGC...GUA-3'
target GGGCU UCGGGU
|:||| :||||:
tRF CUCGA GGCCCG-5'
3'-UGA UA
| | |
16 13 1 | -21.9 | 6 | RNAhybrid | tRF-5 | tsRBase | protein_coding | 3' UTR | ||
| hsa_tsr012844 | tDR-1:16-Lys-TTT-3-M2 | ENST00000000233 | ARF5-201 | ENSG00000004059 | ARF5 | 1 970 980 1032
| | | |
5'-CUG...GGUGA GGUGC...GUA-3'
target GGGCU UCGGGU
|:||| :||||:
tRF CUCGA GGCCCG-5'
3'-UGA UA
| | |
16 13 1 | -10.48 | 6 | IntaRNA | tRF-5 | tsRBase | protein_coding | 3' UTR | ||
| hsa_tsr012951 | tDR-1:34-Lys-CTT-1-M2 | ENST00000000233 | ARF5-201 | ENSG00000004059 | ARF5 | 1 491 519 1032
| | | |
5'-CUG...CCAUG AGCGA A GCUAC...GUA-3'
target CCCGUG GCUGACUGA C AGCUGGG
|||:|| :|:|||||| | |||:|||
tRF GGGUAC UGGCUGACU G UCGGCCC
3'-CUCA GAGA C A G-5'
| | |
34 30 2 | -42.1 | 9 | RNAhybrid | 5' tRH / tiR | tsRBase | protein_coding | CDS | ||
| hsa_tsr012951 | tDR-1:34-Lys-CTT-1-M2 | ENST00000000233 | ARF5-201 | ENSG00000004059 | ARF5 | 1 491 519 1032
| | | |
5'-CUG...CCAUG AG GA A GCUAC...GUA-3'
target CCCGUG C GCUGACUGA C AGCUGGG
|||:|| | :|:|||||| | |||:|||
tRF GGGUAC G UGGCUGACU G UCGGCCC
3'-CUCA GA A C A G-5'
| | |
34 30 2 | -14.89 | 9 | IntaRNA | 5' tRH / tiR | tsRBase | protein_coding | CDS | ||
| hsa_tsr012957 | tDR-1:40-Lys-CTT-1-M2 | ENST00000000233 | ARF5-201 | ENSG00000004059 | ARF5 | 1 491 519 1032
| | | |
5'-CUG...CCAUG AGCGA A GCUAC...GUA-3'
target CCCGUG GCUGACUGA C AGCUGGG
|||:|| :|:|||||| | |||:|||
tRF GGGUAC UGGCUGACU G UCGGCCC
3'-CUA...UCUCA GAGA C A G-5'
| | |
40 30 2 | -42.1 | 9 | RNAhybrid | 5' tRH / tiR | tsRBase | protein_coding | CDS | ||
| hsa_tsr012957 | tDR-1:40-Lys-CTT-1-M2 | ENST00000000233 | ARF5-201 | ENSG00000004059 | ARF5 | 1 491 519 1032
| | | |
5'-CUG...CCAUG AG GA A GCUAC...GUA-3'
target CCCGUG C GCUGACUGA C AGCUGGG
|||:|| | :|:|||||| | |||:|||
tRF GGGUAC G UGGCUGACU G UCGGCCC
3'-CUA...UCUCA GA A C A G-5'
| | |
40 30 2 | -14.62 | 9 | IntaRNA | 5' tRH / tiR | tsRBase | protein_coding | CDS | ||
| hsa_tsr013685 | tDR-1:34-Gly-TCC-2 | ENST00000000233 | ARF5-201 | ENSG00000004059 | ARF5 | 1 205 238 1032
| | | |
5'-CUG...AAGUU G AU C C A U G UUCAA...GUA-3'
target GGGG AG UG UCACCAC AU CC ACCA A GC
::|| || || ||||||| || || |||| | ||
tRF 3'-UUCC UC AC AGUGGUG UA GG UGGU U CG-5'
G GAU G A U G
| |
34 1 | -33.8 | 7 | RNAhybrid | 5' tRH / tiR | tsRBase | protein_coding | CDS | ||
| hsa_tsr015132 | tDR-1:24-Ala-AGC-4-M7 | ENST00000000233 | ARF5-201 | ENSG00000004059 | ARF5 | 1 4 24 1032
| | | |
5'-CUG C CC CCGCG...GUA-3'
target CUGCUGCUG GC CAUCCCC
||:|::||| || |||||||
tRF GAUGGUGAC CG GUAGGGG-5'
3'-GA U AU
| |
21 1 | -33 | 9 | RNAhybrid | tRF-5 | tsRBase | protein_coding | 5' UTR | ||
| hsa_tsr015132 | tDR-1:24-Ala-AGC-4-M7 | ENST00000000233 | ARF5-201 | ENSG00000004059 | ARF5 | 1 458 481 1032
| | | |
5'-CUG...UGGUA ACA AGG G AACGC...GUA-3'
target UUUGCCA AGC ACAU CCC
|:|:||| ||| |||| |||
tRF AGAUGGU UCG UGUA GGG-5'
3'-G GAC A G
| |
22 1 | -27.9 | 7 | RNAhybrid | tRF-5 | tsRBase | protein_coding | CDS |
